Package: epivis 0.0.0.9000

Paul Campbell

epivis: Tools for visualising epidemiological data

Static visualisation of patient level linelist data.

Authors:Paul Campbell [aut, cre], Hugo Soubrier [aut]

epivis_0.0.0.9000.tar.gz
epivis_0.0.0.9000.zip(r-4.5)epivis_0.0.0.9000.zip(r-4.4)epivis_0.0.0.9000.zip(r-4.3)
epivis_0.0.0.9000.tgz(r-4.4-any)epivis_0.0.0.9000.tgz(r-4.3-any)
epivis_0.0.0.9000.tar.gz(r-4.5-noble)epivis_0.0.0.9000.tar.gz(r-4.4-noble)
epivis_0.0.0.9000.tgz(r-4.4-emscripten)epivis_0.0.0.9000.tgz(r-4.3-emscripten)
epivis.pdf |epivis.html✨
epivis/json (API)

# Install 'epivis' in R:

install.packages('epivis', repos = c('https://epicentre-msf.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epicentre-msf/epivis/issues

Datasets:

moissala_measles - Simulated Measles outbreak in Moïssala

On CRAN:

4.50 score 3 stars 3 scripts 6 exports 79 dependencies

Last updated 28 days agofrom:647687117a. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 25 2024
R-4.5-win	WARNING	Oct 25 2024
R-4.5-linux	WARNING	Oct 25 2024
R-4.4-win	WARNING	Oct 25 2024
R-4.4-mac	WARNING	Oct 25 2024
R-4.3-win	WARNING	Oct 25 2024
R-4.3-mac	WARNING	Oct 25 2024

Exports:dodge_x_labs label_breaks plot_epicurve plot_miss_vis plot_pyramid plot_stacked_bar

Dependencies:aweek base64enc bigD bitops bslib cachem class classInt cli colorspace commonmark cpp11 curl digest dplyr e1071 evaluate fansi farver fastmap fontawesome fs generics ggplot2 ggthemes glue gt gtable highr htmltools htmlwidgets isoband jquerylib jsonlite juicyjuice KernSmooth knitr labeling lattice lifecycle lubridate magrittr markdown MASS Matrix memoise mgcv mime munsell nlme pillar pkgconfig proxy purrr R6 rappdirs RColorBrewer Rcpp reactable reactR rlang rmarkdown sass scales stringi stringr tibble tidyr tidyselect timechange tinytex utf8 V8 vctrs viridisLite withr xfun xml2 yaml

Age/Sex Pyramids

Rendered frompyramids.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2021-05-23
Started: 2021-01-27

Epidemic Curves

Rendered fromepicurves.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2021-06-02
Started: 2020-08-20

Visualising Missing Data

Hugo Soubrier

Rendered frommissing_data_visualisation.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-10-25
Started: 2024-07-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Wrapper function to dodge xAxis labels	dodge_x_labs
Format break labels	label_breaks
Simulated Measles outbreak in Moïssala (Chad)	moissala_measles
Plot incidence over time from patient level data	plot_epicurve
Missing data visualisation	plot_miss_vis
Plot Age/Sex Pyramids	plot_pyramid
Stacked barplot	plot_stacked_bar

Usage by other packages (reverse dependencies)